Quote:
Originally Posted by markdek
On my Kindle, I do mix everything, and put either type of books in one or more collections....either Amazon or sideloaded, it doesn't matter (on the Kindle). I'll think about moving my Amazon Kindle bought books into Calibre.....do I do this manually?...I assume there is no sync in Calibre.
Or, like you said I'll do it manually on the Kindle, but this kind of defeats the nice/full features of the plugin?...right?
AND, thanks for the continued help/responses..... 
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To get the Amazon books in calibre, hook it up, wait for it to load (when the checkmarks show up next to the books in calibre that are on it), then click the "Device" button in the toolbar to switch to device view. Click on the "in library" column header to sort, then select all the books not in the library (they'll have no checkmark in this view), right-click and select add to library (or similar, you'll see it).