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@capnm - Funnily enough I have seen that exact same error once since that timestamp change was made too. Unfortunately in my process of investigating exactly the problem I somehow caused the error to not happen again and I havent found another file to replicate it with since.
As you point out it happens with Tweak ePub so it is nothing to do with the plugin and I believe everything to do with that change we made to set timestamps on the unzipped files. From memory it doesn't happen at the unzip/explode stage (where the change to the code was made) but instead happens when the zip file is attempted to be rebuilt.
I *definitely* would not want the patch reversed out as have found it way too useful, but obviously we have to fix this problem with it. Any chance you could attach the ePub to a ticket for someone to take a look at?
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