Hi. Well, I am actually using both Amazon InDesign Kindle Plug-in and EPUB export. Why? The KPI is still in beta and there are some significant issues still and probably isn't up to date with ID CS5.5 EPUB (in combination with calibre for .mobi conversion) is extremely stable and most recently the EPUB export has been dramatically overhauled.
Thanks for the advice about unpacking .mobi.
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