If you're running the newest OS version (1.2) then putting them in My Files/Books will have them integrate with your B&N content in the Library from there you can Add to Home (just tap and hold and Add to Home). Actually with 1.2 you can just tap and hold on the book right in the My Files/Books folder too and get the same option to Add to Home (AFAIK you can do that from any folder [I know I can do it from the books in my ezPDF folder and well as My Files/Books]).
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