There is no logical reason you would loose the internal memory by adding a micro sdcard - it is just storage space, after all you wouldn't loose your memory on a computer if you added an extra hard disk. Just think of the sdcard as a ssd on a computer.
You can load directly on to the sdcard from your computer but I would let the PE see it first and check it. On my EE I tried to use a card that I'd formatted FAT but it didn't see it. When I reformatted it as FAT32 there were no problems - the same goes for USB sticks.
If I have a lot of manuals I want to transfer to the EE I just put the card in a reader and transfer them to the card that way. I find it much easier to do that than trying to use a bootable CD with windows on it since all the operating systems here are OS/2 and can cause problems if I'm not careful with attaching the EE and making sure it's recognised.
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