If you select a store directly from the "Get books" drop down menu it will still open in the internal browser. If you go into preferences, plugins, select the store. You can configure this on a per store basis to not use the internal browser.
In the store search dialog under the list of stores is a check box that says open in external browser. The change will default this to checked. However, the search dialog remembers your selection. So if in the next release you see it check, uncheck it and it will stay that way.
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