Well, creating collections based on folders is certainly possible to implement. It runs counter to using Calibre to create them, but then so does Edit. I suppose yet another option might be worth considering. Modifying the Customize window to handle Create from Calibre or Create from Folders sensibly could be interesting.
I won't necessarily implement everything, but I'll have a look, and depending on feedback/effort we'll see how it goes. I still have to release 1.58 - but I think it'll jump to 1.6 if testing of some items in the next test version goes ok.
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