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Where have you made this mess?
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When my wife and I were buying free and paid books from Amazon, smashwords, gutenberg and other free sites (I searched 80 sites for free books), I left the import for Calibre at "get metadata from file contents" and a lot of the books were a mess and the downloaded metadata incorrect because of lazy packagers.
Not every book (AZW, EPUB) had metadata set in the book itself and author names, titles and other details were wrong and I had collected over 1,400 books. of course, I had loads of different formats (including PDF which didn't extract cover or metadata)
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If you are using Calibre, you could certainly use a regular expression to fix all the metadata.
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Don't understand regular expressions, they do my head in (sigh). Might try to manually rename everything no matter how long it takes.