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That is strange. When I split a file, the header is copied to the new file together with the information below the splitting point. That includes the link to the stylesheet. So, your method should enable you to have the stylesheet to the files.
What do you mean with empty tags? Sometimes the Tidy function will change some code, but I have never seen it between paragraphs. Do you also experience it if you switch Tidy off?
Could you give an example of the source before and after the split? I think there must be something in the code causing Tidy to do this.
I assume where you say HTML, you mean XHTML, right?
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