So you are both saying the Kindle and the plugin are showing collections, but the Calibre Device view is not showing any collections for the books (and the books are marked as on device)?
If it was just a few collections, then it could be the ASIN issue. But if its none, then something is going on.
If on the Kindle you manually add a book (that was sent to the device from calibre) to a collection, then connect it to your PC, do you see the collection listed in the Device View against the book?
It could be something in the collections.json format but I'd have to see some examples. I am seeing collections in Calibre, although I haven't verified every one. The calibre code looks like its doing essentially the same thing as my plugin so it should see the same collections. With a test json and some edits to the source I might be able to find the issue.
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