Well if in your position I would strongly consider using Calibre to reconvert the ebooks back into epub. I'm not a Kobo owner, but perhaps 11 of the original epubs are poorly built and wont show up on the Kobo. I know once I had an epub on my ereader that didn't go past a particular page, but a reconvert fixed it (poor html reference or something).
Just a thought. Take 5 min to try it out.
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