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In my library I have a custom column which I use to create a collection of the books which are on my reading next list. Once I've read the book, I add the rating in Calibre along with removing the book from the custom column. And if necessary, I use the Fetch Annotations feature to download my bookmarks and notes into Calibre, then I re-convert the book with the summary section added to the first page of the book. That is so I will have a record of them in case I ever lose them later. The next time collections are created, they are updated with the latest version of the books on the list. This process is a manual process.
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