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Ctrl+D was just downloading all metadata for me, including tags. But I noticed a couple of days ago that it started to copy some tags across all books, like it took one book and copied those tags into the rest of the books I downloaded metadata onto from there on in.
So this morning I deleted all of my Calibre data and started fresh, and it was great. Ctrl+D brought down info and tags with no problems.
Just a bit earlier, I realised that it wasn't filling in my series info, so I grabbed the Goodreads metadata plugin. Tagged some books with that enabled and every book from where it had tagged an Agatha Christie novel was then tagged as being about women sleuths. Went into the preferences and deleted the plugin, deleted all tags from the books that had just been incorrectly tagged and restarted Calibre. And since the restart? All tags are fine again.
From that, it can only be the plugin that was causing the problem. I didn't have the problem with a clean install, I installed the plugin and the problem appeared again, I delete the plugin and it went away.
The only plugins I have installed are the defaults, and only the Goodreads metadata one (not the covers or shelf).
Hope that helps, Kiwidude.
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