Atlantis exports also quite good epubs - "just" in html - but after a short loading (save the toc before out of the epub) in Sigil there all xhtml-files, the correct folder structure in the epub...
only some little additions in the toc - and ready ist the nearly perfect ebook...
(ok, little more work, if you want tables, dropcaps, smallcaps, but for "normal" books works ist fine...
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