@kovidgoyal, you're making an assumption about how people organize their books. I organize by author, then by format, then within format folders I have individual books. I think quite a few people do it this way. I'm not saying your program ought to account for this preference-- it's your program, you don't have to provide any functionality beyond what you want to include. But I don't think assuming that everyone groups books by multiple versions within the same directory is valid.
That being said, I don't use libprs500, because I don't have a Sony reader, so my input is moot, I suppose.
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