@almagary: I don't understand what you are asking--blame it on a long week at work. Can you try explaining it some other way for my flaky brain?
On the menu bar, there is something that looks like green arrows chasing themselves labeled "Remove Books". The drop down menu gives the option to remove book from device.
If you click on the device icon, you can choose to show books in the main memory, or show the sd card (if you have one). Double click in the collections field and type in "Im_Reading" or "Read". It will process this change when you restart the reader.
You do have to have an uncorrupted Db, so it might be worth doing a factory reset, and starting over if you feel that somehow the Db itself became corrupted.
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