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Originally Posted by EowynCarter
That forces me
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It doesn't "force" you to do anything. you choose what you want to do, including not using the software if the cons outweigh the pros.
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Originally Posted by EowynCarter
a ) Have a copy of the files outside calibre library
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In my book having a backup is always a good thing.
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Originally Posted by EowynCarter
But not the "how to deal with multiple version of the same book" problem.
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You are correct. Since calibre is not a document management program this aspect you're looking for is still a hodgepodge of using tags and custom columns as you see fit. Creating the workflow for this is up to the individual user.
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Originally Posted by EowynCarter
Do calibre have a "exclude books from synchronize" function ?
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Calibre will allow for automatically sending downloaded news to your device but all other synchronization of books is manual.
Update: calibre will, on some devices upon connecting, automatically synchronize any new metadata in the library with the metadata of the books already on the device. This feature can be turned off.