Good idea, but after decompiling you can't recomplile it back. JD and any other decompiler will produce conflicting class names and namespaces. You can try to make simple Kindle booklet and you'll see, you can't use Kindle API directly due it obfuscation.
In my keyboard and localization hacks I used BCEL library to direct modify class(JAR) files. With BCEL you can inject you own code into Kindle JAR's.
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