I agree if you have heavy text PDFs which are hundreds of pages, then the book viewer has bookmarks, table of contents and remembers last page read. If you have a shorter PDF which is graphics intensive or multi-column, then the QuickOffice viewer is the way to go. There are pros and cons to each method and that's why it would be nice to chose.
I think the only way to create a DRM'ed book is to use the Adobe Content Server software. I do have Adobe Acrobat Pro v9. At the moment the only way I see around this problem is to convert text-heavy PDF's to EPUB's, which usually creates other formatting issues and requires time / effort.
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