Have you enabled Annotations Backup?
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Managing Popular Highlights
If you have a Kindle device, you can turn off having your highlights in popular highlights by turning off Annotations Backup in Settings on your device. If you have a Kindle App, we will be adding this capability soon. Annotations BackUp backs up your annotations and last page read and syncs them across devices. You can also remove highlights you made previously from Popular Highlights.
To turn on/off Annotations Backup:
1. Navigate to Kindle's Home screen and press the Menu button.
2. Select "Settings."
3. Select the desired option next to "Annotations Backup."
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