I think you need to decide to make the effort to either go through your books and find the offender(s), and/or decide to use a newer version of Calibre that has had some bugs fixed, or simply learn to live with the crashing. You can't have it both ways.
To me, you're barking up the wrong tree: You don't want to spend time looking for possible corrupt files, and you don't want to use a more recent version of the software to do your conversions.
If not, well, I don't see the point of posting about your ereader crashing, to put it bluntly.
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