Unfortunately, the job was no longer listed in Calibre. I guess it must delete them after a certain time. I regenerated the catalog but this one hasn't caused any crashes.
However I did notice some errors in the job details.
Quote:
Collecting Kindle bookmarks matching catalog entries
Error: PDF file is damaged - attempting to reconstruct xref table...
Error: Couldn't find trailer dictionary
Error: Couldn't read xref table
53 genre tags in database (excluding genres matching \[.+\]):
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If you think that's important enough to open a ticket, I'll create one with the entire log.
thanks