The only way to keep shelves after you unregister and re-register would be to save the shelves in the BN cloud, which BN doesn't do. All nookbooks are listed in My Nook Library on BN.com only in the order they were purchased. I also use the Nook for PC App, and there is no shelf organization there either--another sign that it's not that way in the cloud. So I doubt it's a bug. BN either didn't think it was necessary to back up shelves or totally overlooked it.
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