MobileRead Forums - View Single Post - Problem with Pubmed RSS in Calibre

Does anyone have any suggestions at all? I just tried it again with the latest version and I still get errors. I would really like to get Pubmed RSS working since that's how I track all my science articles.

Calibre seems to download each article, but then at the end, it says that there's some parsing / syntax error. I would really appreciate it if someone could help me with this. Does anyone have any idea even where to start?

Thanks,
J

The RSS feed:

Code:

http://eutils.ncbi.nlm.nih.gov/entrez/eutils/erss.cgi?rss_guid=1-KHXJhm35hdwR_GETsQC9mkttGxFHp_mUPhzonNiPfgkf8ksK

Calibre recipe:

Code:

class AdvancedUserRecipe1289843702(BasicNewsRecipe):
    title          = u'Pubmed ID'
    oldest_article = 120
    max_articles_per_feed = 100

    feeds          = [(u'Pubmed ID', u'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/erss.cgi?rss_guid=1-KHXJhm35hdwR_GETsQC9mkttGxFHp_mUPhzonNiPfgkf8ksK')]

The error code:

Spoiler:

11-15-2010, 12:48 PM	#2
jerrykid Junior Member Posts: 4 Karma: 10 Join Date: Nov 2010 Device: Kindle 3	Please help me with this Does anyone have any suggestions at all? I just tried it again with the latest version and I still get errors. I would really like to get Pubmed RSS working since that's how I track all my science articles. Calibre seems to download each article, but then at the end, it says that there's some parsing / syntax error. I would really appreciate it if someone could help me with this. Does anyone have any idea even where to start? Thanks, J The RSS feed: Code: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/erss.cgi?rss_guid=1-KHXJhm35hdwR_GETsQC9mkttGxFHp_mUPhzonNiPfgkf8ksK Calibre recipe: Code: class AdvancedUserRecipe1289843702(BasicNewsRecipe): title = u'Pubmed ID' oldest_article = 120 max_articles_per_feed = 100 feeds = [(u'Pubmed ID', u'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/erss.cgi?rss_guid=1-KHXJhm35hdwR_GETsQC9mkttGxFHp_mUPhzonNiPfgkf8ksK')] The error code: Spoiler: ERROR: Conversion Error: <b>Failed</b>: Fetch news from Pubmed ID Fetch news from Pubmed ID Resolved conversion options calibre version: 0.7.28 {'asciiize': False, 'author_sort': None, 'authors': None, 'base_font_size': 0, 'book_producer': None, 'change_justification': 'original', 'chapter': None, 'chapter_mark': 'pagebreak', 'comments': None, 'cover': None, 'debug_pipeline': None, 'disable_font_rescaling': False, 'dont_compress': False, 'dont_download_recipe': False, 'extra_css': None, 'font_size_mapping': None, 'footer_regex': '(?i)(?<=<hr>)((\\s<a name=\\d+></a>((<img.+?>)<br>\\s)?\\d+<br>\\s.?\\s)\|(\\s* <a name=\\d+></a>((<img.+?>)<br>\\s)?.?<br>\\s\\d+))(?=<br>)' , 'header_regex': '(?i)(?<=<hr>)((\\s<a name=\\d+></a>((<img.+?>)<br>\\s)?\\d+<br>\\s.?\\s)\|(\\s* <a name=\\d+></a>((<img.+?>)<br>\\s)?.?<br>\\s\\d+))(?=<br>)' , 'html_unwrap_factor': 0.40000000000000002, 'input_encoding': None, 'input_profile': <calibre.customize.profiles.InputProfile object at 0x057838B0>, 'insert_blank_line': False, 'insert_metadata': False, 'isbn': None, 'keep_ligatures': False, 'language': None, 'level1_toc': None, 'level2_toc': None, 'level3_toc': None, 'line_height': 0, 'linearize_tables': False, 'lrf': False, 'margin_bottom': 5.0, 'margin_left': 5.0, 'margin_right': 5.0, 'margin_top': 5.0, 'max_toc_links': 50, 'no_chapters_in_toc': False, 'no_inline_navbars': True, 'no_inline_toc': False, 'output_profile': <calibre.customize.profiles.KindleOutput object at 0x05783B90>, 'page_breaks_before': None, 'password': None, 'personal_doc': '[PDOC]', 'prefer_author_sort': False, 'prefer_metadata_cover': False, 'preprocess_html': False, 'pretty_print': False, 'pubdate': None, 'publisher': None, 'rating': None, 'read_metadata_from_opf': None, 'remove_first_image': False, 'remove_footer': False, 'remove_header': False, 'remove_paragraph_spacing': False, 'remove_paragraph_spacing_indent_size': 1.5, 'rescale_images': False, 'series': None, 'series_index': None, 'smarten_punctuation': False, 'tags': None, 'test': False, 'timestamp': None, 'title': None, 'title_sort': None, 'toc_filter': None, 'toc_threshold': 6, 'toc_title': None, 'use_auto_toc': False, 'username': None, 'verbose': 2} InputFormatPlugin: Recipe Input running Synthesizing mastheadImage Downloading Fetching http://www.ncbi.nlm.nih.gov/entrez/q...actDownloading DownloadingDownloading Downloading Fetching FetchingFetchinghttp://www.ncbi.nlm.nih.gov/entrez/query.fcgi?tmpl=NoSidebarfile&db=PubMed&cmd=Retrie ve&list_uids=21071652&dopt=Abstract http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Fetching http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Processing images... Processing images... Processing images... Fetching http://www.ncbi.nlm.nih.gov/portal/p...1348/12313.css Fetching http://www.ncbi.nlm.nih.gov/portal/p...1348/12313.css Fetching http://www.ncbi.nlm.nih.gov/portal/p...1348/12313.css Processing images... Processing images... Fetching http://www.ncbi.nlm.nih.gov/portal/p...1348/12313.css Fetching http://www.ncbi.nlm.nih.gov/portal/p...1348/12313.css Fetching http://www.ncbi.nlm.nih.gov/portal/p.../css/31982.css Fetching http://www.ncbi.nlm.nih.gov/portal/p.../css/31982.css Fetching http://www.ncbi.nlm.nih.gov/portal/p.../css/31982.css Fetching http://www.ncbi.nlm.nih.gov/portal/p.../css/31982.css Fetching http://www.ncbi.nlm.nih.gov/portal/p.../css/31982.css Fetching http://www.ncbi.nlm.nih.gov/portal/p...3499/14534.css Fetching http://www.ncbi.nlm.nih.gov/portal/p...34.cssFetching http://www.ncbi.nlm.nih.gov/portal/p...3499/14534.css Fetching http://www.ncbi.nlm.nih.gov/portal/p...3499/14534.css Fetching http://www.ncbi.nlm.nih.gov/portal/p...3499/14534.css Fetching http://www.ncbi.nlm.nih.gov/portal/p...3419/31291.css Fetching http://www.ncbi.nlm.nih.gov/portal/p...3419/31291.css Fetching http://www.ncbi.nlm.nih.gov/portal/p...3419/31291.css Fetching http://www.ncbi.nlm.nih.gov/portal/p...3419/31291.css Fetching http://www.ncbi.nlm.nih.gov/portal/p...3419/31291.css Recursion limit reached. Skipping links in http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Recursion limit reached. Skipping links in http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Recursion limit reached. Skipping links in http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Recursion limit reached. Skipping links in http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Recursion limit reached. Skipping links in http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_3\query.xhtml Downloaded article: Mobile phones to improve HIV treatment adherence. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Downloading http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_1\query.xhtml Fetching http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Downloading Fetching http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_0\query.xhtml Downloading Fetching http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_4\query.xhtml Downloading Fetching http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_2\query.xhtml Downloaded article: Prion-Like Behavior of Amyloid-{beta}. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Downloaded article: Conserved molecular components for pollen tube reception and fungal invasion. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Downloading Fetching http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Downloaded article: Poliovirus vaccine and vaccine-derived polioviruses. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Downloaded article: Effects of a mobile phone short message service on antiretroviral treatment adherence in Kenya (WelTel Kenya1): a randomised trial. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Processing images... Processing images... Processing images... Recursion limit reached. Skipping links in http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Recursion limit reached. Skipping links in http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Recursion limit reached. Skipping links in http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Processing images... Processing images... Recursion limit reached. Skipping links in http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Recursion limit reached. Skipping links in http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_7\query.xhtml Downloading Fetching http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_6\query.xhtml Downloading Fetching http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_5\query.xhtml Downloading Fetching http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Downloaded article: Mycology: Spores ride a cooperative wind. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Downloaded article: Picking up the pace--scale-up of MDR tuberculosis treatment programs. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Downloaded article: Poliovirus vaccine and vaccine-derived polioviruses. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_8\query.xhtml http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_9\query.xhtml Downloaded article: Medical microbiology: A toxin contest. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Downloaded article: A shocking discovery. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Processing images... Processing images... Recursion limit reached. Skipping links in http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Fetching http://www.ncbi.nlm.nih.gov/corehtml...s/figpopup.css Processing images... Recursion limit reached. Skipping links in http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_10\query.xhtml Downloaded article: Structure of a fucose transporter in an outward-open conformation. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Fetching http://www.ncbi.nlm.nih.gov/portal/p...3499/14534.css http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_11\query.xhtml Downloaded article: The role of toxin A and toxin B in Clostridium difficile infection. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Recursion limit reached. Skipping links in http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_12\query.xhtml Downloaded article: Purified human BRCA2 stimulates RAD51-mediated recombination. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract Parsing all content... Parsing feed_0/article_2/index.html ... Parsing feed_0/article_4/stylesheets/style3.css ... Parsing feed_0/article_2/stylesheets/style0.css ... Property: Unknown Property name. [9:115: _top] Property: Unknown Property name. [19:5: _margin-top] Property: Unknown Property name. [66:134: zoom] Property: Unknown Property name. [66:154: _margin-top] Property: Unknown Property name. [67:178: _background-image] CSSValue: No match: ('CHAR', u'%', 69, 129) CSSStyleDeclaration: Syntax Error in Property: width: 19 Last edited by jerrykid; 11-15-2010 at 01:05 PM.