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It will be recreated when you add a note or highlight. If your annotations are sync'ed, they are backed up to Amazon, and they are still stored in the book. "My Clippings" is just an extra copy of notes, etc., not the original/only copy. If you do have sync turned on, log into your account at kindle.amazon.com, and you should be able to view your notes, etc. You could cut and paste into a document, if you like.
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