I think you have got the facts now. Here they are seen from my point of view.
The hole scene is a mess. There are 2 (main) ways to go: amazon and epub. They are incompatable.
Epub is the more free system, but not more free than adobe is in control.
Amazon has complete control, if you go that way. I think they have made the best overall setup, if you want things to be simple for the user.
If you as a user want freedom, there are no options, but to liberate the books once you have bought them. The you can convert to any reader if necessary.
This is a long thread, where you really have considered your options. You must let us know the outcome.
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