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Perhaps an ability to exclude some pages from the clustering process would work nicely, so they can be cropped separately. Could be something simple, like entering the page numbers you want to exclude in a text box before the clustering process is started. Or maybe give an option to let the user see see all the pages at once, ticking off the ones they want to exclude before clustering? Fantastic tool by the way! Clustering all the pages together was a clever idea.
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