I like to organize my ebooks by author with a Calibre created listing of what books I have and the series data for the books so that I can read them in order.
Therefore I have a "collection" created for major authors, plus some general collections like: Games, Travel, Self Help books, Cookbooks, Currently Reading etc.
You may have noticed from some of the other posts on the subject, if you beginning the name of your collection with a symbol and a space, then the "Collections" folders will sort first. An Example. - Follet, Ken would be my collection folder for works by Ken Follet.
Hope this helps.
cheers
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