That's one of the first things I plan to check when my K3 arrives (which looks like it will probably be Monday). But maybe someone whose K3 arrives before then can try it out and let us know.
IMO if they are not storing PDF annotations in the PDF, where they can be consumed by other PDF readers, then their work to add PDF annotation is more or less a wasted effort. I'm not sure it makes sense to put these annotations in clippings.txt, back them up to your amazon account etc. since PDFs really have no role inside the Kindle ecosystem (you can't buy them, archive them, sync them, etc.)
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