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If you installed it through the Ubuntu repositories, it should have automatically uninstalled when you uninstalled one of the dependencies. You could also try "sudo apt-get remove calibre"
If you installed it with the binary, as itimpi said, you should just be able to delete the folder where Calibre was installed, though you may have to run sudo to do so.
Bear in mind that I don't think you have to uninstall Calibre in this situation, unless you are low on disk space.
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