Hi Brandobras, If you have MSWord it might be worth a try opening your RTF and then SaveAs Webpage-Filtered.
If you then open the resulting HTML file in a text editor (e.g. Notepad++) you should easily be able to see whether the soft-hyphens are still present. If necessary, you can then get rid of them with a simple Find/ReplaceAll.
If you then re-import the HTML file into Calibre you should have a nice clean source from which to do your conversion.
If you don't have MSWord I would think (guessing) the free Open Office would also be able to SaveAs HTML.
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