I think the best way to deal with the question of defaults would simply be to allow you to save your own defaults to a file (or the registry, if you want it to persist across versions).
I would much prefer that, as I usually go for the portrait mode and I have to remember to change it each time. I know I would prefer no overlap or almost no overlap. so even then, somebody like me would have to remember to change it each time.
This is a tremendous program that just keeps getting better...
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