Isn't there a way to convert the PDF's I make into a EPub file etc. by using Calibre? I've been reading the link you provided (informative and helpful), however the company we outsource all of our ebook files to just require a PDF. There is NO WAY they adjust tables, headers, footers etc from a PDF, you would need the native file to do it the EPub export way. I'm thinking they just take our PDF and use some sort of converter.
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