Problem with Pubmed RSS in Calibre

[jerrykid]

Hi guys, I've been trying unsuccessfully to get the pubmed RSS to work. The link works fine in Google Reader or Firefox, but Calibre stops with errors. Anyone have any ideas?

Thanks!

Here's the link:

http://eutils.ncbi.nlm.nih.gov/entrez/eutils/erss.cgi?rss_guid=1-KHXJhm35hdwR_GETsQC9mkttGxFHp_mUPhzonNiPfgkf8ksK

Here's the recipe I was using:

class AdvancedUserRecipe1289346936(BasicNewsRecipe):
    title          = u'Pubmed ID'
    oldest_article = 120
    max_articles_per_feed = 100

    feeds          = [(u'Pubmed ID', u'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/erss.cgi?rss_guid=1-KHXJhm35hdwR_GETsQC9mkttGxFHp_mUPhzonNiPfgkf8ksK')]

Here's the error code:

Spoiler:

ERROR: Conversion Error: <b>Failed</b>: Fetch news from Pubmed ID

Fetch news from Pubmed ID
Resolved conversion options
calibre version: 0.7.27
{'asciiize': False,
'author_sort': None,
'authors': None,
'base_font_size': 0,
'book_producer': None,
'change_justification': 'original',
'chapter': None,
'chapter_mark': 'pagebreak',
'comments': None,
'cover': None,
'debug_pipeline': None,
'disable_font_rescaling': False,
'dont_compress': False,
'dont_download_recipe': False,
'extra_css': None,
'font_size_mapping': None,
'footer_regex': '(?i)(?<=<hr>)((\\s*<a name=\\d+></a>((<img.+?>)*<br>\\s*)?\\d+<br>\\s*.*?\\s*)|(\\s* <a name=\\d+></a>((<img.+?>)*<br>\\s*)?.*?<br>\\s*\\d+))(?=<br>)' ,
'header_regex': '(?i)(?<=<hr>)((\\s*<a name=\\d+></a>((<img.+?>)*<br>\\s*)?\\d+<br>\\s*.*?\\s*)|(\\s* <a name=\\d+></a>((<img.+?>)*<br>\\s*)?.*?<br>\\s*\\d+))(?=<br>)' ,
'html_unwrap_factor': 0.40000000000000002,
'input_encoding': None,
'input_profile': <calibre.customize.profiles.InputProfile object at 0x052C44F0>,
'insert_blank_line': False,
'insert_metadata': False,
'isbn': None,
'keep_ligatures': False,
'language': None,
'level1_toc': None,
'level2_toc': None,
'level3_toc': None,
'line_height': 0,
'linearize_tables': False,
'lrf': False,
'margin_bottom': 5.0,
'margin_left': 5.0,
'margin_right': 5.0,
'margin_top': 5.0,
'max_toc_links': 50,
'no_chapters_in_toc': False,
'no_inline_navbars': True,
'no_inline_toc': False,
'output_profile': <calibre.customize.profiles.KindleOutput object at 0x052C47D0>,
'page_breaks_before': None,
'password': None,
'personal_doc': '[PDOC]',
'prefer_author_sort': False,
'prefer_metadata_cover': False,
'preprocess_html': False,
'pretty_print': False,
'pubdate': None,
'publisher': None,
'rating': None,
'read_metadata_from_opf': None,
'remove_first_image': False,
'remove_footer': False,
'remove_header': False,
'remove_paragraph_spacing': False,
'remove_paragraph_spacing_indent_size': 1.5,
'rescale_images': False,
'series': None,
'series_index': None,
'smarten_punctuation': False,
'tags': None,
'test': False,
'timestamp': None,
'title': None,
'title_sort': None,
'toc_filter': None,
'toc_threshold': 6,
'toc_title': None,
'use_auto_toc': False,
'username': None,
'verbose': 2}
InputFormatPlugin: Recipe Input running
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http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract
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http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract

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http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract
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Downloaded article: Structures of the CXCR4 Chemokine GPCR with Small-Molecule and Cyclic Peptide Antagonists. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract
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Downloaded article: Hospital-acquired infections due to gram-negative bacteria. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract
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Downloaded article: Comparison of two active case-finding strategies for community-based diagnosis of symptomatic smear-positive tuberculosis and control of infectious tuberculosis in Harare, Zimbabwe (DETECTB): a cluster-randomised trial. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract
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Property: Invalid value for "CSS Level 2.1" property: -moz-inline-box [13:2: display]
Property: Unknown Property name. [15:1: zoom]
CSSStyleDeclaration: Unexpected token, ignoring upto u'*display: inline !'. [16:1: *]
Property: No ":" after name found: u'important' [16:19: important]
Property: No property value found: u'important'. [16:19: important]
CSSStyleDeclaration: Syntax Error in Property: important
CSSStyleDeclaration: Unexpected token, ignoring upto u'.cursor: hand;'. [20:1: .]
Property: Invalid value for "CSS Level 2.1" property: rgba(0, 0, 0, 0.05) [24:2: background-color]
Property: Unknown Property name. [25:1: -moz-box-shadow]
Property: Unknown Property name. [26:1: -webkit-box-shadow]
Property: Unknown Property name. [27:1: box-shadhow]
Property: Invalid value for "CSS Level 2.1" property: rgba(0, 0, 0, 0.7) [42:1: border-color]
CSSStyleDeclaration: Unexpected token, ignoring upto u'.border-color: #444;'. [43:1: .]
CSSStyleDeclaration: Unexpected token, ignoring upto u'.border-width: 10px;'. [44:1: .]
Property: Unknown Property name. [45:1: -moz-border-radius]
Property: Unknown Property name. [46:1: -webkit-border-radius]
Property: Unknown Property name. [47:1: border-radius]
Property: Unknown Property name. [49:1: -moz-box-shadow]
Property: Unknown Property name. [50:1: -webkit-box-shadow]
Property: Unknown Property name. [51:1: box-shadhow]
Property: Unknown Property name. [83:1: word-wrap]
CSSStyleDeclaration: Unexpected token, ignoring upto u'.width: 104px;'. [84:1: .]
CSSStyleDeclaration: Unexpected token, ignoring upto u'*border: 1px solid white;'. [88:1: *]
CSSStyleDeclaration: Unexpected token, ignoring upto u'.cursor: hand;'. [96:1: .]
Property: Unknown Property name. [101:1: filter]
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Parsing index.html ...
Forcing index.html into XHTML namespace
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Property: Invalid value for "CSS Level 2.1" property: -moz-inline-box [30:15: display]
CSSStyleDeclaration: Unexpected token, ignoring upto u'*display:inline;'. [30:60: *]
Property: Unknown Property name. [30:76: zoom]
CSSStyleDeclaration: Unexpected token, ignoring upto u'*padding-bottom:1em;'. [45:118: *]
Property: Unknown Property name. [45:139: box-shadow]
Property: Unknown Property name. [45:172: -webkit-box-shadow]
Property: Unknown Property name. [45:213: -moz-box-shadow]
CSSValue: No match: ('HASH', u'#666\x00', 45, 324)
CSSStyleDeclaration: Syntax Error in Property: border-bottom: 1px solid #666

[jerrykid]

Does anyone have any suggestions at all? I just tried it again with the latest version and I still get errors. I would really like to get Pubmed RSS working since that's how I track all my science articles.

Calibre seems to download each article, but then at the end, it says that there's some parsing / syntax error. I would really appreciate it if someone could help me with this. Does anyone have any idea even where to start?

Thanks,
J

The RSS feed:

http://eutils.ncbi.nlm.nih.gov/entrez/eutils/erss.cgi?rss_guid=1-KHXJhm35hdwR_GETsQC9mkttGxFHp_mUPhzonNiPfgkf8ksK

Calibre recipe:

class AdvancedUserRecipe1289843702(BasicNewsRecipe):
    title          = u'Pubmed ID'
    oldest_article = 120
    max_articles_per_feed = 100

    feeds          = [(u'Pubmed ID', u'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/erss.cgi?rss_guid=1-KHXJhm35hdwR_GETsQC9mkttGxFHp_mUPhzonNiPfgkf8ksK')]

The error code:

Spoiler:

ERROR: Conversion Error: <b>Failed</b>: Fetch news from Pubmed ID

Fetch news from Pubmed ID
Resolved conversion options
calibre version: 0.7.28
{'asciiize': False,
'author_sort': None,
'authors': None,
'base_font_size': 0,
'book_producer': None,
'change_justification': 'original',
'chapter': None,
'chapter_mark': 'pagebreak',
'comments': None,
'cover': None,
'debug_pipeline': None,
'disable_font_rescaling': False,
'dont_compress': False,
'dont_download_recipe': False,
'extra_css': None,
'font_size_mapping': None,
'footer_regex': '(?i)(?<=<hr>)((\\s*<a name=\\d+></a>((<img.+?>)*<br>\\s*)?\\d+<br>\\s*.*?\\s*)|(\\s* <a name=\\d+></a>((<img.+?>)*<br>\\s*)?.*?<br>\\s*\\d+))(?=<br>)' ,
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[marbs]

just by looking at it i would add:
use_embedded_content=True

[Starson17]

Originally Posted by marbs

just by looking at it i would add:
use_embedded_content=True

I agree.

[jerrykid]

Thanks guys! That seems to have done the trick.

J