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Old 11-09-2010, 06:58 PM   #1
jerrykid
Junior Member
jerrykid began at the beginning.
 
Posts: 4
Karma: 10
Join Date: Nov 2010
Device: Kindle 3
Problem with Pubmed RSS in Calibre

Hi guys, I've been trying unsuccessfully to get the pubmed RSS to work. The link works fine in Google Reader or Firefox, but Calibre stops with errors. Anyone have any ideas?

Thanks!

Here's the link:

Code:
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/erss.cgi?rss_guid=1-KHXJhm35hdwR_GETsQC9mkttGxFHp_mUPhzonNiPfgkf8ksK
Here's the recipe I was using:

Code:
class AdvancedUserRecipe1289346936(BasicNewsRecipe):
    title          = u'Pubmed ID'
    oldest_article = 120
    max_articles_per_feed = 100

    feeds          = [(u'Pubmed ID', u'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/erss.cgi?rss_guid=1-KHXJhm35hdwR_GETsQC9mkttGxFHp_mUPhzonNiPfgkf8ksK')]

Here's the error code:

Spoiler:
ERROR: Conversion Error: <b>Failed</b>: Fetch news from Pubmed ID

Fetch news from Pubmed ID
Resolved conversion options
calibre version: 0.7.27
{'asciiize': False,
'author_sort': None,
'authors': None,
'base_font_size': 0,
'book_producer': None,
'change_justification': 'original',
'chapter': None,
'chapter_mark': 'pagebreak',
'comments': None,
'cover': None,
'debug_pipeline': None,
'disable_font_rescaling': False,
'dont_compress': False,
'dont_download_recipe': False,
'extra_css': None,
'font_size_mapping': None,
'footer_regex': '(?i)(?<=<hr>)((\\s*<a name=\\d+></a>((<img.+?>)*<br>\\s*)?\\d+<br>\\s*.*?\\s*)|(\\s* <a name=\\d+></a>((<img.+?>)*<br>\\s*)?.*?<br>\\s*\\d+))(?=<br>)' ,
'header_regex': '(?i)(?<=<hr>)((\\s*<a name=\\d+></a>((<img.+?>)*<br>\\s*)?\\d+<br>\\s*.*?\\s*)|(\\s* <a name=\\d+></a>((<img.+?>)*<br>\\s*)?.*?<br>\\s*\\d+))(?=<br>)' ,
'html_unwrap_factor': 0.40000000000000002,
'input_encoding': None,
'input_profile': <calibre.customize.profiles.InputProfile object at 0x052C44F0>,
'insert_blank_line': False,
'insert_metadata': False,
'isbn': None,
'keep_ligatures': False,
'language': None,
'level1_toc': None,
'level2_toc': None,
'level3_toc': None,
'line_height': 0,
'linearize_tables': False,
'lrf': False,
'margin_bottom': 5.0,
'margin_left': 5.0,
'margin_right': 5.0,
'margin_top': 5.0,
'max_toc_links': 50,
'no_chapters_in_toc': False,
'no_inline_navbars': True,
'no_inline_toc': False,
'output_profile': <calibre.customize.profiles.KindleOutput object at 0x052C47D0>,
'page_breaks_before': None,
'password': None,
'personal_doc': '[PDOC]',
'prefer_author_sort': False,
'prefer_metadata_cover': False,
'preprocess_html': False,
'pretty_print': False,
'pubdate': None,
'publisher': None,
'rating': None,
'read_metadata_from_opf': None,
'remove_first_image': False,
'remove_footer': False,
'remove_header': False,
'remove_paragraph_spacing': False,
'remove_paragraph_spacing_indent_size': 1.5,
'rescale_images': False,
'series': None,
'series_index': None,
'smarten_punctuation': False,
'tags': None,
'test': False,
'timestamp': None,
'title': None,
'title_sort': None,
'toc_filter': None,
'toc_threshold': 6,
'toc_title': None,
'use_auto_toc': False,
'username': None,
'verbose': 2}
InputFormatPlugin: Recipe Input running
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Last edited by jerrykid; 11-15-2010 at 01:04 PM.
jerrykid is offline   Reply With Quote
Old 11-15-2010, 12:48 PM   #2
jerrykid
Junior Member
jerrykid began at the beginning.
 
Posts: 4
Karma: 10
Join Date: Nov 2010
Device: Kindle 3
Please help me with this

Does anyone have any suggestions at all? I just tried it again with the latest version and I still get errors. I would really like to get Pubmed RSS working since that's how I track all my science articles.

Calibre seems to download each article, but then at the end, it says that there's some parsing / syntax error. I would really appreciate it if someone could help me with this. Does anyone have any idea even where to start?

Thanks,
J

The RSS feed:

Code:
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/erss.cgi?rss_guid=1-KHXJhm35hdwR_GETsQC9mkttGxFHp_mUPhzonNiPfgkf8ksK
Calibre recipe:
Code:
class AdvancedUserRecipe1289843702(BasicNewsRecipe):
    title          = u'Pubmed ID'
    oldest_article = 120
    max_articles_per_feed = 100

    feeds          = [(u'Pubmed ID', u'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/erss.cgi?rss_guid=1-KHXJhm35hdwR_GETsQC9mkttGxFHp_mUPhzonNiPfgkf8ksK')]

The error code:

Spoiler:
ERROR: Conversion Error: <b>Failed</b>: Fetch news from Pubmed ID

Fetch news from Pubmed ID
Resolved conversion options
calibre version: 0.7.28
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'output_profile': <calibre.customize.profiles.KindleOutput object at 0x05783B90>,
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InputFormatPlugin: Recipe Input running
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Fetching FetchingFetchinghttp://www.ncbi.nlm.nih.gov/entrez/query.fcgi?tmpl=NoSidebarfile&db=PubMed&cmd=Retrie ve&list_uids=21071652&dopt=Abstract
http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract

Fetching http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract
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Downloaded article: Mobile phones to improve HIV treatment adherence. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract
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http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_1\query.xhtml
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Downloaded article: Prion-Like Behavior of Amyloid-{beta}. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract
Downloaded article: Conserved molecular components for pollen tube reception and fungal invasion. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract
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Downloaded article: Poliovirus vaccine and vaccine-derived polioviruses. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract
Downloaded article: Effects of a mobile phone short message service on antiretroviral treatment adherence in Kenya (WelTel Kenya1): a randomised trial. from http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract
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http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_7\query.xhtml
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http://www.ncbi.nlm.nih.gov/entrez/q...&dopt=Abstract saved to c:\users\jk\appdata\local\temp\calibre_0.7.28_tmp_ h8fdj0\calibre_0.7.28_capoju_plumber\feed_0\articl e_6\query.xhtml
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Property: Unknown Property name. [9:115: _top]
Property: Unknown Property name. [19:5: _margin-top]
Property: Unknown Property name. [66:134: zoom]
Property: Unknown Property name. [66:154: _margin-top]
Property: Unknown Property name. [67:178: _background-image]
CSSValue: No match: ('CHAR', u'%', 69, 129)
CSSStyleDeclaration: Syntax Error in Property: width: 19

Last edited by jerrykid; 11-15-2010 at 01:05 PM.
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Old 11-16-2010, 02:39 AM   #3
marbs
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just by looking at it i would add:
use_embedded_content=True
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Old 11-16-2010, 09:42 AM   #4
Starson17
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Quote:
Originally Posted by marbs View Post
just by looking at it i would add:
use_embedded_content=True
I agree.
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Old 11-16-2010, 08:28 PM   #5
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Thanks guys! That seems to have done the trick.

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