ended up noticing that the index.html file was not actually correct, and it looks like the format of the pdf file isn't going to play nicely with conversion after all (apparently a couple pages in, it switched to vertical mode instead of going across from left to right), so I'm going to give up for now... I know of a website that has the text formatted left-to-right for the entire thing, it just has a lot of stuff around the text i want, so I was avoiding using it, since I didn't want to have to strip everything...
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