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No., If you look at the script being used, it copies the content of the normally inacessible partitions over on to the external SD card. This requires the unit to have booted as normal, and for modifications to have been made to get the script to run.
If the base linux system is wiped out, and the device rendered non bootable, no means exists to copy the data back to to the hidden parititons.
This is is the exact same on other kobo models; there is no means to access the "system" partition of the internal SD card from an USB connection.
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