I did all of my links in my original Word document and they carried through cleanly to HTML and then into Sigil. I grant that Word carries some junk into HTML and onward, put most of these are easy fixes in Sigil, mostly image labels\ formats and not-permitted xhtml categories, etc, and can be fixed with find/replace. About 25-30 fixes in a 40,000-word document didn't seem like a killer task to me.
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