Sorry, about the only thing I can say is that these devices have to be put back together properly for the IR to work. I don't have an Aura HD, but, I always get it wrong with my Touch and Glo when I pull it apart.
I would suggest searching the posts of @Ken Maltby. He pulled and Aura HD apart when they were new and I remember he had issues getting the IR to work again. There might be a clue in his posts to help you.
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