willus, thank you for your reply.
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Originally Posted by willus
Try using -as to autostraighten it.
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(Straightening page: rotating cc by -0.13 deg.)
It did the trick, now the lines are aligned properly.
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K2pdfopt uses some fuzzy logic to decide when to join lines, and it is hard to make it foolproof. There currently are not any options that affect that behavior.
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I can imagine that changing it to suit one document might easily break others.