Read a lot about the epub format and create some epub's yourself by hand (I find the jedisaber site to be of great help there). Look at some epub's.
If the html includes video and/or audio, than epub is not the format for you. That is not covered. You can use font's and pictures though.
By the way, you can call parts of Calibre from you project to convert to epub. So, you write some part and call a program of Calibre with your input. That should ease your project.
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