I'm having problems with footnote links too. I have managed to follow the links back to the body text after manually turning to the end of the book to read the footnotes, but despite trying repeatedly, I still haven't once succeeded in following a footnote link from the body text. Like others, I either get page turns/menu or highlighting for dictionary look-up.
Suggested solutions:
a) Disable page-turns for a region around the footnote. (Could occasionally make it more difficult to turn a page with lots of footnotes)
b) Have one of the menus (either the highlighting one or the usual one-tap settings menu) have an option listing the footnote links on the current page.
c) Define a gesture for following links.
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