Importing to MS Word can leave you with 100s of different font types and styles. With Atlantis, it's a very easy process to clean them up, or change them all to a few types. I once scanned a book and imported to MS Word and I kept putting off finishing it for months it was so horrible to do compared to Atlantis. Atlantis also lets you export to .epub, which actually turned out pretty decent. From there I import into Sigil to do final cleaning up and formatting.
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