@trott3r, i have a Kindle 3 and a Nook Color. When I add a book into calibre, I always add cover and metadata if needed, then convert it to both mobi and epub formats.
calibre knows what format belongs on which device when you plug it into your computer, so no worries at all. You have the option to 'send to device' or to 'send specific format to device', but calibre know what will and will not work on any given device. Just plug in your ereader and go! (And send a donation to calibre's developer if you're of a mind as well for his amazing work.)
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