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I'm having the same problem, but on WinXP SP2. After I designate the folder, the GUI very briefly appears with the migrating dialog on top. I tried all the suggestions on the page you cited, but no go. Here's the output from debug:
C:\Program Files\calibre>calibre-debug -c "from calibre.gui2.main import main;
ain()"
Traceback (most recent call last):
File "debug.py", line 96, in <module>
File "debug.py", line 80, in main
File "<string>", line 1, in <module>
File "C:\Program Files\calibre\library.zip\calibre\gui2\main.py", line 1287, in main
File "C:\Program Files\calibre\library.zip\calibre\gui2\main.py", line 237, in __init__
File "calibre\library\database2.pyo", line 1166, in migrate_old
File "calibre\library\database2.pyo", line 491, in set_path
File "calibre\library\database2.pyo", line 464, in construct_path_name
File "calibre\library\database2.pyo", line 375, in get_property
IndexError: list index out of range
C:\Program Files\calibre>
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