I do use Calibre extensively to fix up the strangely large number of poorly published ebooks that I come across, before they go on my ereader, but I want a direct method to manage my Collections. To expand upon my remarks, above, I do not link my books to the shelves on which I keep them; so, I see no reason to link my ereader to specific software packages or desktop hardware, either.
Editing the XML file works for me on my PRS-500.
I offer the details, here, for anyone who is interested in the internal workings of the Sony ereaders.
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