I am stuck on this one too - I can get Adobe Digital Editions to read DRM Epubs on my Ubuntu desktop but I cannot transfer DRM books to my reader and I cannot get Sony Reader software to work (or even install it using wine).
ADE doesn't recognise my Sony reader and if I drag and drop a DRM Epub to the reader, I get a "Protected by DRM" notification and no access to the book.
For free Epubs I found Calibre really good - recognises the Sony and transfers books across without a hitch.
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