It may help if you tell us what version of Calibre, which model of reader, and what operating system is on your computer.
Using Calibre 0.6.x or 0.7.x on Linux the Kobo Ereader (Wi Fi version) shows up in Calibre without doing anything special. I don't use Windows or Macintosh with Calibre, so I can't tell you about those two systems.
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