Try this: convert the HTML book to EPUB, edit it in Sigil (make sure to have a correct TOC), then convert the EPUB file to MOBI.
By editing with Sigil, you can make sure the book have a correct NCX file, then calibre will automatically insert the correct inline TOC when converting EPUB to MOBI.
Last edited by atjnjk; 02-06-2011 at 11:28 PM.
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