I note that an unistall of JBPatch 3.x followed by a reinstall of JBPatch 4.0.0 triggers something like four automatic reboot-like things (three framework restarts followed by a full reboot). For the last couple of those reboots I was worrying rather a lot that I might have stuck the thing in a reboot loop... but thankfully not. The restarts and reboots eventually ended and I had a working JBPatch 4.0.0.
As an aside, until I went into the newly-re-added jbpatch.azw2 for the first time, it was appearing with the wrong name (the name of the next item in the list, also the first on a new page, an emailed-in Calibre-generated personal document). I suspect this is a perfectly normal firmware bug, nothing to do with JBPatch, but it has never happened before...
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